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 | Acceso al texto completo restringido a Biblioteca INIA Treinta y Tres. Por información adicional contacte bibliott@inia.org.uy. |
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Registro completo
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Biblioteca (s) : |
INIA Treinta y Tres. |
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Fecha : |
14/09/2017 |
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Actualizado : |
13/09/2018 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
VIKRAM, A.; ROVIRA, P.J.; AGGA, G.E.; ARTHUR, T.M.; BOSILEVAC, J.M.; WHEELER, T.L.; MORLEY, P.S.; BELK, K.E.; SCHMIDT, J.W. |
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Afiliación : |
AMIT VIKRAM, U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, NE.; PABLO JUAN ROVIRA SANZ, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay. Department of Animal Sciences Colorado State University, CO, US.; GETHYM E. AGGA, U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, NE.; TERRANCE M. ARTHUR, U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, NE.; JOSEPH M. BOSILEVAC, U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, NE.; TOMMY L. WHEELER, U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, NE.; PAUL S. MORLEY, Department of Animal Sciences Colorado State University, CO, US. Department of Clinical Sciences, College of Veterinary Medicine, Colorado State University, CO, US.; KEITH E. BELK, Department of Animal Sciences Colorado State University, CO, US.; JOHN W. SCHMIDT, U.S. Department of Agriculture, Agricultural Research Service, U.S. Meat Animal Research Center, NE. Department of Animal Sciences Colorado State University, CO, US. |
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Título : |
Impact of "Raised Without Antibiotics" beef cattle production practices on occurrences of antimicrobial resistance. |
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Fecha de publicación : |
2017 |
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Fuente / Imprenta : |
Applied and Environmental Microbiology, 2017, v. 83, no. 22, e01682-17. |
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DOI : |
10.1128/AEM.01682-17 |
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Idioma : |
Inglés |
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Notas : |
Article history: Accepted manuscript posted online 8 September 2017// published in november 2017. |
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Contenido : |
The specific antimicrobial resistance (AMR) decreases that can be expected from reducing antimicrobial (AM) use in United States (US) beef production have not been defined. To address this data gap, feces were recovered from 36 lots of ?raised without antibiotics? (RWA) and 36 lots of ?conventional? (CONV) beef cattle. Samples (N = 719) were collected during harvest and distributed over a year. AMR was assessed by: i) culture of six AM-resistant bacteria (ARB); ii) qPCR for 10 AMR genes (ARGs); iii) an qPCR array of 84 ARGs; and iv) metagenomic sequencing. Generally, AMR levels were similar, but some were higher in CONV. The prevalence of third-generation cephalosporin-resistant (3GCr) Escherichia coli was marginally different between production systems (47.5 % CONV, 34.8% RWA, P = 0.04), but the seasonal effect (92.8% summer, 48.3% winter, P < 0.01) was greater. Erythromycin-resistant (ERYr) Enterococcus spp. concentrations significantly differed between production systems (CONV = 1.91 log10 CFU/g, RWA = 0.73 log10 CFU/g, P < 0.01). Levels of aadA1, ant(6)-I, blaACI, erm(A), erm(B), erm(C), erm(F), erm(Q), tet(A), tet(B), tet(M), and tet(X) ARGs were higher (P < 0.05) in CONV. Aggregate abundances of all 43 ARGs detected by metagenomic sequencing and the aggregate abundances of ARGs in the aminoglycoside, ?-lactam, macrolide-lincosamide-streptogramin B (MLSB), and tetracycline AM classes did not differ (log2 fold change < 1.0) between CONV and RWA. These results suggest that further reductions of AM use in US beef cattle production may not yield significant AMR reductions beyond MLSB and tetracycline resistance. MenosThe specific antimicrobial resistance (AMR) decreases that can be expected from reducing antimicrobial (AM) use in United States (US) beef production have not been defined. To address this data gap, feces were recovered from 36 lots of ?raised without antibiotics? (RWA) and 36 lots of ?conventional? (CONV) beef cattle. Samples (N = 719) were collected during harvest and distributed over a year. AMR was assessed by: i) culture of six AM-resistant bacteria (ARB); ii) qPCR for 10 AMR genes (ARGs); iii) an qPCR array of 84 ARGs; and iv) metagenomic sequencing. Generally, AMR levels were similar, but some were higher in CONV. The prevalence of third-generation cephalosporin-resistant (3GCr) Escherichia coli was marginally different between production systems (47.5 % CONV, 34.8% RWA, P = 0.04), but the seasonal effect (92.8% summer, 48.3% winter, P < 0.01) was greater. Erythromycin-resistant (ERYr) Enterococcus spp. concentrations significantly differed between production systems (CONV = 1.91 log10 CFU/g, RWA = 0.73 log10 CFU/g, P < 0.01). Levels of aadA1, ant(6)-I, blaACI, erm(A), erm(B), erm(C), erm(F), erm(Q), tet(A), tet(B), tet(M), and tet(X) ARGs were higher (P < 0.05) in CONV. Aggregate abundances of all 43 ARGs detected by metagenomic sequencing and the aggregate abundances of ARGs in the aminoglycoside, ?-lactam, macrolide-lincosamide-streptogramin B (MLSB), and tetracycline AM classes did not differ (log2 fold change < 1.0) between CONV and RWA. These results suggest tha... Presentar Todo |
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Palabras claves : |
ANTIMICROBIAL RESISTANCE; BACTERIAL CULTURE; BEEF CATTLE PRODUCTION; METAGENOMICS; RAISED WITHOUT ANTIBIOTICS. |
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Asunto categoría : |
L73 Enfermedades de los animales |
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Marc : |
LEADER 02646naa a2200301 a 4500
001 1057565
005 2018-09-13
008 2017 bl uuuu u00u1 u #d
024 7 $a10.1128/AEM.01682-17$2DOI
100 1 $aVIKRAM, A.
245 $aImpact of "Raised Without Antibiotics" beef cattle production practices on occurrences of antimicrobial resistance.$h[electronic resource]
260 $c2017
500 $aArticle history: Accepted manuscript posted online 8 September 2017// published in november 2017.
520 $aThe specific antimicrobial resistance (AMR) decreases that can be expected from reducing antimicrobial (AM) use in United States (US) beef production have not been defined. To address this data gap, feces were recovered from 36 lots of ?raised without antibiotics? (RWA) and 36 lots of ?conventional? (CONV) beef cattle. Samples (N = 719) were collected during harvest and distributed over a year. AMR was assessed by: i) culture of six AM-resistant bacteria (ARB); ii) qPCR for 10 AMR genes (ARGs); iii) an qPCR array of 84 ARGs; and iv) metagenomic sequencing. Generally, AMR levels were similar, but some were higher in CONV. The prevalence of third-generation cephalosporin-resistant (3GCr) Escherichia coli was marginally different between production systems (47.5 % CONV, 34.8% RWA, P = 0.04), but the seasonal effect (92.8% summer, 48.3% winter, P < 0.01) was greater. Erythromycin-resistant (ERYr) Enterococcus spp. concentrations significantly differed between production systems (CONV = 1.91 log10 CFU/g, RWA = 0.73 log10 CFU/g, P < 0.01). Levels of aadA1, ant(6)-I, blaACI, erm(A), erm(B), erm(C), erm(F), erm(Q), tet(A), tet(B), tet(M), and tet(X) ARGs were higher (P < 0.05) in CONV. Aggregate abundances of all 43 ARGs detected by metagenomic sequencing and the aggregate abundances of ARGs in the aminoglycoside, ?-lactam, macrolide-lincosamide-streptogramin B (MLSB), and tetracycline AM classes did not differ (log2 fold change < 1.0) between CONV and RWA. These results suggest that further reductions of AM use in US beef cattle production may not yield significant AMR reductions beyond MLSB and tetracycline resistance.
653 $aANTIMICROBIAL RESISTANCE
653 $aBACTERIAL CULTURE
653 $aBEEF CATTLE PRODUCTION
653 $aMETAGENOMICS
653 $aRAISED WITHOUT ANTIBIOTICS
700 1 $aROVIRA, P.J.
700 1 $aAGGA, G.E.
700 1 $aARTHUR, T.M.
700 1 $aBOSILEVAC, J.M.
700 1 $aWHEELER, T.L.
700 1 $aMORLEY, P.S.
700 1 $aBELK, K.E.
700 1 $aSCHMIDT, J.W.
773 $tApplied and Environmental Microbiology, 2017$gv. 83, no. 22, e01682-17.
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Registro original : |
INIA Treinta y Tres (TT) |
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| Registros recuperados : 16 | |
| 1. |  | WEINROTH, M.; ROVIRA, P.J.; YANG, X.; PARKER, J.; MORLEY, P.S.; BELK, K.E. Characterization of antibiotic resistance transmission in the beef production system. Abstract. In: RCM Reciprocal Meat Conference, 71, Kansas City, 2018. Kansas, American Meat Science Association (AMSA), 2018.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 2. | | ROVIRA, P.J.; BRAULT, S.A.; COSTARD, S.; MORLEY, P.S.; BELK, K.E. Association between antimicrobial use and antimicrobial resistance in bacteria isolated from feces or respiratory secretions of feedlot cattle: a systematic review and meta-analysis. [Abstract]. ln: Conference of Research Workers in Animal Disease. (3-5 Dec., 2017, Chicago, Illinois, USA) Presentation Abstracts. Chicago, Illinois (USA): CRWAD, 2017. p. 103.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 3. | | WEINROTH, M.D.; YANG, X.; NOYES, N.R.; ROVIRA, P.J.; MARTIN, J.N.; MORLEY, P.S.; BELK, K.E. Foodborne pathogens and virulence in the microbiome of cattle grown naturally verses conventionally. In: 63rd International Congress of Meat Science and Technology. Cork. Ireland. 2017. Troy, D.; McDonnell, C.; Hinds, L.; Kerry, J. eds. Nurturing locally, growing globally. The Netherlands: Wageningen Academic Publishers, 2017. p. 505-507| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Treinta y Tres. |
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| 5. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N.R.; BURGESS, B.A.; YANG, X.; WEINROTH, M.D.; LINKE, L.; MAGNUSON, R.; BOUCHER, C.; BELK, K.E.; MORLEY, P.S. A cautionary report for pathogen identification using shotgun metagenomics; a comparison to aerobic culture and polymerase chain reaction for Salmonella enterica identification. Frontier in Microbiology, 2019, 10:2499. doi: 10.3389/fmicb.2019.02499 7 p. Article history: received: 8 July 2019 // Accepted 16 October 2019 // Published 01 November 2019.
Open Access Journal. www.frontiersin.org| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 6. | | NOYES, N. R.; ABDO, Z.; ROVIRA, P.J.; DOSTER, E.; YANG, X.; LINKE, L. M.; BURGESS, B. A.; MARTIN. J.; BOUCHER, C.; MORLEY, P. S.; BELK, K. E. A bayesian approach to investigating the effect of metaphylaxis on the microbiome-resistance of the commercial feedlot steers. Abstract. In: Plant and Animal Genome Conference, 24. San Diego, USA, 2016.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 7. | | LAKIN, S.M.; DEAN, C.J.; DETTENWANGER, A.; ROSS, A.; DOSTER, E.; ROVIRA, P.J.; ABDO, Z.; JONES, K.L.; BELK, K.E.; MORLEY, P.S.; BOUCHER, C. MEGaRES and AmrPlusPlus, a comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data.[Abstract]. In: PROCEEDINGS OF THE 96TH ANNUAL CONFERENCE OF RESEARCH WORKERS IN ANIMAL DEISEASES, CHICAGO, USA. 2016. Session Ecology and Management of Foodborne Agents. 065.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 8. | | VIKRAM, A.; ROVIRA, P.J.; AGGA, G.E.; ARTHUR, T.M.; BOSILEVAC, J.M.; WHEELER, T.L.; MORLEY, P.S.; BELK, K.E.; SCHMIDT, J.W. Impact of "Raised Without Antibiotics" beef cattle production practices on occurrences of antimicrobial resistance. Applied and Environmental Microbiology, 2017, v. 83, no. 22, e01682-17. Article history: Accepted manuscript posted online 8 September 2017// published in november 2017.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - A |
| Biblioteca(s): INIA Treinta y Tres. |
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| 9. | | ROVIRA, P.J.; MCALLISTER, T.; LAKIN, S.M.; COOK, S.R.; DOSTER, E.; NOYES, N. R.; WEINROTH, M.D.; YANG, X.; PARKER, J. K.; BOUCHER, C.; BOOKER, C. W.; WOENER, D. R.; BELK, K. E.; MORLEY, P. S. Characterization of the microbial resistome in conventional and "raised without antibiotics" beef and dairy production systems. Frontier in Microbiology, September 2019. v. 10, article 1980, 11 p. OPEN ACCESS. Received 18 March 2019 // Accepted 12 August 2019 // Published 4 September 2019.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : -- - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 10. | | WEINROTH, M.D.; SCOTT, H.M.; NORBY, B.; LONERAGAN, G.H.; NOYES, N.R.; ROVIRA, P.J.; DOSTER, E.; YANG, X.; WOERNER, D.R.; MORLEY, P.S.; BELK, K.E. Effects of ceftiofur and chlortetracycline on the resistomes of feedlot cattle. Applied and Environmental Microbiology, July 2018, vol. 84, no.13, e00610-18. This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license. Article history: Received 15 March 2018. / Accepted 24 April 2018. / Accepted manuscript posted online 4 May 2018. OPEN ACCESS.| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Las Brujas; INIA Treinta y Tres. |
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| 11. | | LAKIN, S.M.; DEAN, C.; NOYES, N.R.; DETTENWANGER, A.; ROSS, A. S.; DOSTER, E.; ROVIRA, P.J.; ABDO, Z.; JONES, K.L.; RUIZ, J.; BELK, K.E.; MORLEY, P.S.; BOUCHER, C. MEGARes: an antimicrobial resistance database for high throughput sequencing. Nucleic Acids Research, 2017 v.45 p.574-580. Article History: Published online 2016 Nov 24.
DOI: https://doi.org/10.1093/nar/gkw1009| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : A - A |
| Biblioteca(s): INIA Treinta y Tres. |
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| 12. | | NOYES, N.R.; PARKER, J.K.; DEAN, C.J.; RAYMOND, R.A.; WEINROTH, M.E.; ROVIRA, P.J.; DOSTER, E.; ABDO, Z.; MARTIN, J.; JONES, K.L.; RUIZ, J.; BOUCHER, C.A.; BELK, K.E.; MORLEY, P.S. Megarich, a pre-sequencing capture system for enriching and counting resistance genes within metagenomic samples. [Abstract]. In: PROCEEDINGS OF THE 96TH ANNUAL CONFERENCE OF RESEARCH WORKERS IN ANIMAL DEISEASES, CHICAGO, USA. 2016. Session Ecology and Management of Foodborne Agents. - 064.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 13. | | WEINROTH, M.D.; LANKIN, S.M.; NOYES, N.R.; YANG, X.; ROVIRA, P.J.; DOSTER, E.; DEAN, C.; PARKER, J.K.; ANDERSON, C.; ABDO, Z.; BOUCHER, C.; RUIZ, J.; BELK, K.E.; MORLEY, P.S. Metagenomic investigations of antimicrobial resistance in beef, pork, and broiler production systems. [Abstract]. ln: Conference of Research Workers in Animal Disease. (3-5 Dec., 2017, Chicago, Illinois, USA) Presentation Abstracts. Chicago, Illinois (USA): CRWAD, 2017. p. 27.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 14. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N.R.; BURGESS, B. A.; YANG, X.; WEINROTH, M.D.; LAKIN, S.M.; DEAN, C.J.; LINKE, L.; MAGNUSON, R.; JONES, K.I.; BOUCHER, C.; RUIZ, J.; BELK, K.E.; MORLEY, P.S. Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period. Frontier in Microbiology, 2018, 9:1715. 14 p. Article history: Received: 14 April 2018; Accepted: 09 July 2018; Published: 30 July 2018.
Open Access journal.
https://doi.org/10.3389/fmicb.2018.01715| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - -- |
| Biblioteca(s): INIA Treinta y Tres. |
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| 15. | | DOSTER, E.; ROVIRA, P.J.; NOYES, N. R.; BURGESS, B.A.; YANG, X.; WEINROTH, M.; LINKE, L.; MAGNUSON, R.; JONES, K.; BOUCHER, C.; RUIZ, J.; MORLEY, P.S.; BELK, K.E. Use of shotgun metagenomic to evaluate the microbiome in cattle feces following tulathromycin metaphylaxis. [Abstract]. In: Conference of Research Workers in Animal Diseases, 96th, 2015,Chicago (USA): CRWAD, 2015. p. 128.| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Treinta y Tres. |
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| 16. | | NOYES, N.R.; WEINROTH, M.E.; PARKER, J.K.; DEAN, C.J.; LAKIN, S.M.; RAYMOND, R.A.; ROVIRA, P.J.; DOSTER, E.; ABDO, Z.; MARTIN, J.N.; JONES, K.L.; RUIZ, J.; BOUCHER, C.A.; BELK, K.E.; MORLEY, P.S. Enrichment allows identification of diverse, rate elements in metagenomic resistome-virulome sequencing. Microbiome, 2017, 5, p. 142 13 p. Article History: Received: 29 May 2017, Accepted: 5 October 2017, Published: 17 October 2017| Tipo: Artículos en Revistas Indexadas Internacionales | Circulación / Nivel : Internacional - A |
| Biblioteca(s): INIA Treinta y Tres. |
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| Registros recuperados : 16 | |
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